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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.388490.1 | ||||||||
Common Name | Csa_7G375780, LOC101204317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 157aa MW: 18363.6 Da PI: 9.0648 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd++l++ +++ G +W++ +++ g+ R++k+c++rw +yl Cucsa.388490.1 14 RGPWSFEEDQILIKFIQLNGHSNWRALPKKAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T+eE++ ++ +++++G++ W++Ia++++ gRt++++k+ w+++l Cucsa.388490.1 67 RGDFTQEEEQTIITLHQLMGNR-WAAIAARLP-GRTDNEIKNVWHTHL 112 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.116 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.759 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.84E-10 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGPWSFE EDQILIKFIQ LNGHSNWRAL PKKAGLLRCG KSCRLRWTNY 60 LRPDIKRGDF TQEEEQTIIT LHQLMGNRWA AIAARLPGRT DNEIKNVWHT HLKKRVNQNE 120 ILKDQTKQNK NDDNHFHDQL SCSSEIKLDG EEDIDRX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 12 | 117 | 5 | 109 | B-MYB |
1gv2_A | 8e-28 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1msf_C | 9e-28 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1mse_C | 9e-28 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1h89_C | 3e-27 | 12 | 118 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-27 | 12 | 118 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681803 | 7e-64 | LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026. | |||
GenBank | LN713255 | 7e-64 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148973.1 | 1e-112 | PREDICTED: myb-related protein Myb4 | ||||
Swissprot | Q7XBH4 | 7e-70 | MYB4_ORYSJ; Myb-related protein Myb4 | ||||
TrEMBL | A0A0A0KAA1 | 1e-112 | A0A0A0KAA1_CUCSA; Uncharacterized protein | ||||
STRING | Bra018267.1-P | 8e-72 | (Brassica rapa) | ||||
STRING | Solyc09g090130.2.1 | 8e-72 | (Solanum lycopersicum) | ||||
STRING | GSMUA_Achr1P09180_001 | 3e-72 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 4e-74 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.388490.1 |
Entrez Gene | 101204317 |
Publications ? help Back to Top | |||
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